Global transpiration data from sap flow measurements: the SAPFLUXNET database
Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos Pereira Marinho Aidar, Scott T. Allen, M. S. Alvarado-Barrientos, Kristina J. Anderson‐Teixeira, L. M. T. Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, Paul V. Bolstad, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jérôme Chave, Hui Chen, César Cisneros Vaca, Kenneth L. Clark, Edoardo Cremonese, Hongzhong Dang, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, C. Frédéric, Michal Dohnal, Jean‐Christophe Domec, Sebinasi Dzikiti, Colin W. Edgar, Rebekka Eichstaedt, Tarek S. El‐Madany, J.A. Elbers, Cleiton B. Eller, E. S. Euskirchen, B. E. Ewers, Patrick Fonti, Alicia Forner, David I. Forrester, Helber C. Freitas, Marta Galvagno, Omar García-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, J. P. Grace, André Granier, Anne Griebel, Yan Guangyu, M.B. Gush, Paul J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernández‐Santana, Valentine Herrmann, Teemu Hölttä, F. Holwerda, J. E. Irvine, Supat Isarangkool Na Ayutthaya, P. G. Jarvis, Hubert Jochheim, Carlos Alfredo Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick N.J. Lane, Petra Lang, Andrei Lapenas, Víctor Lechuga, Minsu Lee, Christoph Leuschner, Jean‐Marc Limousin, Juan Carlos Linares, Maj‐Lena Linderson, Anders Lindroth, Pilar Llorens, Álvaro López‐Bernal, M. M. Loranty, Dietmar Lüttschwager, Cate Macinnis‐Ng, Isabelle Maréchaux, Timothy A. Martin, Ashley M. Matheny, Nate G. McDowell, Sean M. McMahon, Patrick Meir, Ilona Mészáros, Mirco Migliavacca, Patrick J. Mitchell, Meelis Mölder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard J. Norby, Kimberly A. Novick, Walter Oberhuber, Nikolaus Obojes, A. Christopher Oishi, Rafael S. Oliveira, Ram Oren, Jean‐Marc Ourcival, Teemu Paljakka, Óscar Pérez‐Priego, Pablo Luís Peri, Richard L. Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine G. Rascher, George R. Robinson, Humberto Ribeiro da Rocha, Alain Rocheteau, Alexander Röll, Bruno H. P. Rosado, Lucy Rowland, Alexey V. Rubtsov, Santiago Sabaté, Yann Salmon, Roberto L. Salomón, Elisenda Sánchez‐Costa, Karina V. R. Schäfer, Bernhard Schuldt, Alexandr Shashkin, Clément Stahl, Marko Stojanović, Juan Carlos Suárez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesař, Frank M. Thomas, Pantana Tor‐ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, J. M. Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, K. Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, Jordi Martínez‐Vilalta, Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos Pereira Marinho Aidar, Scott T. Allen, M. S. Alvarado-Barrientos, Kristina J. Anderson‐Teixeira, L. M. T. Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, Paul V. Bolstad, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jérôme Chave, Hui Chen, César Cisneros Vaca, Kenneth L. Clark, Edoardo Cremonese, Hongzhong Dang, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, C. Frédéric, Michal Dohnal, Jean‐Christophe Domec, Sebinasi Dzikiti, Colin W. Edgar, Rebekka Eichstaedt, Tarek S. El‐Madany, J.A. Elbers, Cleiton B. Eller, E. S. Euskirchen, B. E. Ewers, Patrick Fonti, Alicia Forner, David I. Forrester, Helber C. Freitas, Marta Galvagno, Omar García-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, J. P. Grace, André Granier, Anne Griebel, Yan Guangyu, M.B. Gush, Paul J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernández‐Santana, Valentine Herrmann, Teemu Hölttä, F. Holwerda, J. E. Irvine, Supat Isarangkool Na Ayutthaya, P. G. Jarvis, Hubert Jochheim, Carlos Alfredo Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick N.J. Lane, Petra Lang, Andrei Lapenas, Víctor Lechuga, Minsu Lee, Christoph Leuschner, Jean‐Marc Limousin, Juan Carlos Linares, Maj‐Lena Linderson, Anders Lindroth, Pilar Llorens, Álvaro López‐Bernal, M. M. Loranty, Dietmar Lüttschwager, Cate Macinnis‐Ng, Isabelle Maréchaux, Timothy A. Martin, Ashley M. Matheny, Nate G. McDowell, Sean M. McMahon, Patrick Meir, Ilona Mészáros, Mirco Migliavacca, Patrick J. Mitchell, Meelis Mölder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard J. Norby, Kimberly A. Novick, Walter Oberhuber, Nikolaus Obojes, A. Christopher Oishi, Rafael S. Oliveira, Ram Oren, Jean‐Marc Ourcival, Teemu Paljakka, Óscar Pérez‐Priego, Pablo Luís Peri, Richard L. Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine G. Rascher, George R. Robinson, Humberto Ribeiro da Rocha, Alain Rocheteau, Alexander Röll, Bruno H. P. Rosado, Lucy Rowland, Alexey V. Rubtsov, Santiago Sabaté, Yann Salmon, Roberto L. Salomón, Elisenda Sánchez‐Costa, Karina V. R. Schäfer, Bernhard Schuldt, Alexandr Shashkin, Clément Stahl, Marko Stojanović, Juan Carlos Suárez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesař, Frank M. Thomas, Pantana Tor‐ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, J. M. Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, K. Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, Jordi Martínez‐Vilalta
Abstract
Abstract. Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land–atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80 % of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 % of the datasets. Many datasets contain data for species that make up 90 % or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The “sapfluxnetr” R package – designed to access, visualize, and process SAPFLUXNET data – is available from CRAN.- Cite:
- Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos Pereira Marinho Aidar, Scott T. Allen, M. S. Alvarado-Barrientos, Kristina J. Anderson‐Teixeira, L. M. T. Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, et al.. 2021. Global transpiration data from sap flow measurements: the SAPFLUXNET database. Earth System Science Data, Volume 13, Issue 6, 13(6):2607–2649.
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@article{Poyatos-2021-Global, title = "Global transpiration data from sap flow measurements: the SAPFLUXNET database", author = {Poyatos, Rafael and Granda, V{\'\i}ctor and Flo, V{\'\i}ctor and Adams, Mark A. and Adorj{\'a}n, Bal{\'a}zs and Aguad{\'e}, David and Aidar, Marcos Pereira Marinho and Allen, Scott T. and Alvarado-Barrientos, M. S. and Anderson‐Teixeira, Kristina J. and Aparecido, L. M. T. and Arain, M. Altaf and Aranda, Ismael and Asbjornsen, Heidi and Baxter, Robert and Beamesderfer, Eric and Berry, Z. Carter and Berveiller, Daniel and Blakely, Bethany and Boggs, Johnny and Bohrer, Gil and Bolstad, Paul V. and Bonal, Damien and Bracho, Rosvel and Brito, Patricia and Brodeur, Jason and Casanoves, Fernando and Chave, J{\'e}r{\^o}me and Chen, Hui and Vaca, C{\'e}sar Cisneros and Clark, Kenneth L. and Cremonese, Edoardo and Dang, Hongzhong and David, Jorge S. and David, Teresa S. and Delpierre, Nicolas and Desai, Ankur R. and Fr{\'e}d{\'e}ric, C. and Dohnal, Michal and Domec, Jean‐Christophe and Dzikiti, Sebinasi and Edgar, Colin W. and Eichstaedt, Rebekka and El‐Madany, Tarek S. and Elbers, J.A. and Eller, Cleiton B. and Euskirchen, E. S. and Ewers, B. E. and Fonti, Patrick and Forner, Alicia and Forrester, David I. and Freitas, Helber C. and Galvagno, Marta and Garc{\'\i}a-Tejera, Omar and Ghimire, Chandra Prasad and Gimeno, Teresa E. and Grace, J. P. and Granier, Andr{\'e} and Griebel, Anne and Guangyu, Yan and Gush, M.B. and Hanson, Paul J. and Hasselquist, Niles J. and Heinrich, Ingo and Hern{\'a}ndez‐Santana, Virginia and Herrmann, Valentine and H{\"o}ltt{\"a}, Teemu and Holwerda, F. and Irvine, J. E. and Ayutthaya, Supat Isarangkool Na and Jarvis, P. G. and Jochheim, Hubert and Joly, Carlos Alfredo and Kaplick, Julia and Kim, Hyun Seok and Klemedtsson, Leif and Kropp, Heather and Lagergren, Fredrik and Lane, Patrick N.J. and Lang, Petra and Lapenas, Andrei and Lechuga, V{\'\i}ctor and Lee, Minsu and Leuschner, Christoph and Limousin, Jean‐Marc and Linares, Juan Carlos and Linderson, Maj‐Lena and Lindroth, Anders and Llorens, Pilar and L{\'o}pez‐Bernal, {\'A}lvaro and Loranty, M. M. and L{\"u}ttschwager, Dietmar and Macinnis‐Ng, Cate and Mar{\'e}chaux, Isabelle and Martin, Timothy A. and Matheny, Ashley M. and McDowell, Nate G. and McMahon, Sean M. and Meir, Patrick and M{\'e}sz{\'a}ros, Ilona and Migliavacca, Mirco and Mitchell, Patrick J. and M{\"o}lder, Meelis and Montagnani, Leonardo and Moore, Georgianne W. and Nakada, Ryogo and Niu, Furong and Nolan, Rachael H. and Norby, Richard J. and Novick, Kimberly A. and Oberhuber, Walter and Obojes, Nikolaus and Oishi, A. Christopher and Oliveira, Rafael S. and Oren, Ram and Ourcival, Jean‐Marc and Paljakka, Teemu and P{\'e}rez‐Priego, {\'O}scar and Peri, Pablo Lu{\'\i}s and Peters, Richard L. and Pfautsch, Sebastian and Pockman, William T. and Preisler, Yakir and Rascher, Katherine G. and Robinson, George R. and Rocha, Humberto Ribeiro da and Rocheteau, Alain and R{\"o}ll, Alexander and Rosado, Bruno H. P. and Rowland, Lucy and Rubtsov, Alexey V. and Sabat{\'e}, Santiago and Salmon, Yann and Salom{\'o}n, Roberto L. and S{\'a}nchez‐Costa, Elisenda and Sch{\"a}fer, Karina V. R. and Schuldt, Bernhard and Shashkin, Alexandr and Stahl, Cl{\'e}ment and Stojanovi{\'c}, Marko and Su{\'a}rez, Juan Carlos and Sun, Ge and Szatniewska, Justyna and Tatarinov, Fyodor and Tesa{\v{r}}, Miroslav and Thomas, Frank M. and Tor‐ngern, Pantana and Urban, Josef and Valladares, Fernando and Tol, Christiaan van der and Meerveld, Ilja van and Varlagin, Andrej and Voigt, Holm and Warren, J. M. and Werner, Christiane and Werner, Willy and Wieser, Gerhard and Wingate, Lisa and Wullschleger, Stan and Yi, K. and Zweifel, Roman and Steppe, Kathy and Mencuccini, Maurizio and Mart{\'\i}nez‐Vilalta, Jordi and Poyatos, Rafael and Granda, V{\'\i}ctor and Flo, V{\'\i}ctor and Adams, Mark A. and Adorj{\'a}n, Bal{\'a}zs and Aguad{\'e}, David and Aidar, Marcos Pereira Marinho and Allen, Scott T. and Alvarado-Barrientos, M. S. and Anderson‐Teixeira, Kristina J. and Aparecido, L. M. T. and Arain, M. Altaf and Aranda, Ismael and Asbjornsen, Heidi and Baxter, Robert and Beamesderfer, Eric and Berry, Z. Carter and Berveiller, Daniel and Blakely, Bethany and Boggs, Johnny and Bohrer, Gil and Bolstad, Paul V. and Bonal, Damien and Bracho, Rosvel and Brito, Patricia and Brodeur, Jason and Casanoves, Fernando and Chave, J{\'e}r{\^o}me and Chen, Hui and Vaca, C{\'e}sar Cisneros and Clark, Kenneth L. and Cremonese, Edoardo and Dang, Hongzhong and David, Jorge S. and David, Teresa S. and Delpierre, Nicolas and Desai, Ankur R. and Fr{\'e}d{\'e}ric, C. and Dohnal, Michal and Domec, Jean‐Christophe and Dzikiti, Sebinasi and Edgar, Colin W. and Eichstaedt, Rebekka and El‐Madany, Tarek S. and Elbers, J.A. and Eller, Cleiton B. and Euskirchen, E. S. and Ewers, B. E. and Fonti, Patrick and Forner, Alicia and Forrester, David I. and Freitas, Helber C. and Galvagno, Marta and Garc{\'\i}a-Tejera, Omar and Ghimire, Chandra Prasad and Gimeno, Teresa E. and Grace, J. P. and Granier, Andr{\'e} and Griebel, Anne and Guangyu, Yan and Gush, M.B. and Hanson, Paul J. and Hasselquist, Niles J. and Heinrich, Ingo and Hern{\'a}ndez‐Santana, Virginia and Herrmann, Valentine and H{\"o}ltt{\"a}, Teemu and Holwerda, F. and Irvine, J. E. and Ayutthaya, Supat Isarangkool Na and Jarvis, P. G. and Jochheim, Hubert and Joly, Carlos Alfredo and Kaplick, Julia and Kim, Hyun Seok and Klemedtsson, Leif and Kropp, Heather and Lagergren, Fredrik and Lane, Patrick N.J. and Lang, Petra and Lapenas, Andrei and Lechuga, V{\'\i}ctor and Lee, Minsu and Leuschner, Christoph and Limousin, Jean‐Marc and Linares, Juan Carlos and Linderson, Maj‐Lena and Lindroth, Anders and Llorens, Pilar and L{\'o}pez‐Bernal, {\'A}lvaro and Loranty, M. M. and L{\"u}ttschwager, Dietmar and Macinnis‐Ng, Cate and Mar{\'e}chaux, Isabelle and Martin, Timothy A. and Matheny, Ashley M. and McDowell, Nate G. and McMahon, Sean M. and Meir, Patrick and M{\'e}sz{\'a}ros, Ilona and Migliavacca, Mirco and Mitchell, Patrick J. and M{\"o}lder, Meelis and Montagnani, Leonardo and Moore, Georgianne W. and Nakada, Ryogo and Niu, Furong and Nolan, Rachael H. and Norby, Richard J. and Novick, Kimberly A. and Oberhuber, Walter and Obojes, Nikolaus and Oishi, A. Christopher and Oliveira, Rafael S. and Oren, Ram and Ourcival, Jean‐Marc and Paljakka, Teemu and P{\'e}rez‐Priego, {\'O}scar and Peri, Pablo Lu{\'\i}s and Peters, Richard L. and Pfautsch, Sebastian and Pockman, William T. and Preisler, Yakir and Rascher, Katherine G. and Robinson, George R. and Rocha, Humberto Ribeiro da and Rocheteau, Alain and R{\"o}ll, Alexander and Rosado, Bruno H. P. and Rowland, Lucy and Rubtsov, Alexey V. and Sabat{\'e}, Santiago and Salmon, Yann and Salom{\'o}n, Roberto L. and S{\'a}nchez‐Costa, Elisenda and Sch{\"a}fer, Karina V. R. and Schuldt, Bernhard and Shashkin, Alexandr and Stahl, Cl{\'e}ment and Stojanovi{\'c}, Marko and Su{\'a}rez, Juan Carlos and Sun, Ge and Szatniewska, Justyna and Tatarinov, Fyodor and Tesa{\v{r}}, Miroslav and Thomas, Frank M. and Tor‐ngern, Pantana and Urban, Josef and Valladares, Fernando and Tol, Christiaan van der and Meerveld, Ilja van and Varlagin, Andrej and Voigt, Holm and Warren, J. M. and Werner, Christiane and Werner, Willy and Wieser, Gerhard and Wingate, Lisa and Wullschleger, Stan and Yi, K. and Zweifel, Roman and Steppe, Kathy and Mencuccini, Maurizio and Mart{\'\i}nez‐Vilalta, Jordi}, journal = "Earth System Science Data, Volume 13, Issue 6", volume = "13", number = "6", year = "2021", publisher = "Copernicus GmbH", url = "https://gwf-uwaterloo.github.io/gwf-publications/G21-160001", doi = "10.5194/essd-13-2607-2021", pages = "2607--2649", abstract = "Abstract. Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land{--}atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80 {\%} of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 {\%} of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 {\%} of the datasets. Many datasets contain data for species that make up 90 {\%} or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The {``}sapfluxnetr{''} R package {--} designed to access, visualize, and process SAPFLUXNET data {--} is available from CRAN.", }
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<roleTerm authority="marcrelator" type="text">author</roleTerm> </role> </name> <name type="personal"> <namePart type="given">Roman</namePart> <namePart type="family">Zweifel</namePart> <role> <roleTerm authority="marcrelator" type="text">author</roleTerm> </role> </name> <name type="personal"> <namePart type="given">Kathy</namePart> <namePart type="family">Steppe</namePart> <role> <roleTerm authority="marcrelator" type="text">author</roleTerm> </role> </name> <name type="personal"> <namePart type="given">Maurizio</namePart> <namePart type="family">Mencuccini</namePart> <role> <roleTerm authority="marcrelator" type="text">author</roleTerm> </role> </name> <name type="personal"> <namePart type="given">Jordi</namePart> <namePart type="family">Martínez‐Vilalta</namePart> <role> <roleTerm authority="marcrelator" type="text">author</roleTerm> </role> </name> <originInfo> <dateIssued>2021</dateIssued> </originInfo> <typeOfResource>text</typeOfResource> <genre authority="bibutilsgt">journal article</genre> <relatedItem type="host"> <titleInfo> <title>Earth System Science Data, Volume 13, Issue 6</title> </titleInfo> <originInfo> <issuance>continuing</issuance> <publisher>Copernicus GmbH</publisher> </originInfo> <genre authority="marcgt">periodical</genre> <genre authority="bibutilsgt">academic journal</genre> </relatedItem> <abstract>Abstract. Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land–atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80 % of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 % of the datasets. Many datasets contain data for species that make up 90 % or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The “sapfluxnetr” R package – designed to access, visualize, and process SAPFLUXNET data – is available from CRAN.</abstract> <identifier type="citekey">Poyatos-2021-Global</identifier> <identifier type="doi">10.5194/essd-13-2607-2021</identifier> <location> <url>https://gwf-uwaterloo.github.io/gwf-publications/G21-160001</url> </location> <part> <date>2021</date> <detail type="volume"><number>13</number></detail> <detail type="issue"><number>6</number></detail> <extent unit="page"> <start>2607</start> <end>2649</end> </extent> </part> </mods> </modsCollection>
%0 Journal Article %T Global transpiration data from sap flow measurements: the SAPFLUXNET database %A Poyatos, Rafael %A Granda, Víctor %A Flo, Víctor %A Adams, Mark A. %A Adorján, Balázs %A Aguadé, David %A Aidar, Marcos Pereira Marinho %A Allen, Scott T. %A Alvarado-Barrientos, M. S. %A Anderson‐Teixeira, Kristina J. %A Aparecido, L. M. T. %A Arain, M. Altaf %A Aranda, Ismael %A Asbjornsen, Heidi %A Baxter, Robert %A Beamesderfer, Eric %A Berry, Z. Carter %A Berveiller, Daniel %A Blakely, Bethany %A Boggs, Johnny %A Bohrer, Gil %A Bolstad, Paul V. %A Bonal, Damien %A Bracho, Rosvel %A Brito, Patricia %A Brodeur, Jason %A Casanoves, Fernando %A Chave, Jérôme %A Chen, Hui %A Vaca, César Cisneros %A Clark, Kenneth L. %A Cremonese, Edoardo %A Dang, Hongzhong %A David, Jorge S. %A David, Teresa S. %A Delpierre, Nicolas %A Desai, Ankur R. %A Frédéric, C. %A Dohnal, Michal %A Domec, Jean‐Christophe %A Dzikiti, Sebinasi %A Edgar, Colin W. %A Eichstaedt, Rebekka %A El‐Madany, Tarek S. %A Elbers, J. A. %A Eller, Cleiton B. %A Euskirchen, E. S. %A Ewers, B. E. %A Fonti, Patrick %A Forner, Alicia %A Forrester, David I. %A Freitas, Helber C. %A Galvagno, Marta %A García-Tejera, Omar %A Ghimire, Chandra Prasad %A Gimeno, Teresa E. %A Grace, J. P. %A Granier, André %A Griebel, Anne %A Guangyu, Yan %A Gush, M. B. %A Hanson, Paul J. %A Hasselquist, Niles J. %A Heinrich, Ingo %A Hernández‐Santana, Virginia %A Herrmann, Valentine %A Hölttä, Teemu %A Holwerda, F. %A Irvine, J. E. %A Ayutthaya, Supat Isarangkool Na %A Jarvis, P. G. %A Jochheim, Hubert %A Joly, Carlos Alfredo %A Kaplick, Julia %A Kim, Hyun Seok %A Klemedtsson, Leif %A Kropp, Heather %A Lagergren, Fredrik %A Lane, Patrick N.J. %A Lang, Petra %A Lapenas, Andrei %A Lechuga, Víctor %A Lee, Minsu %A Leuschner, Christoph %A Limousin, Jean‐Marc %A Linares, Juan Carlos %A Linderson, Maj‐Lena %A Lindroth, Anders %A Llorens, Pilar %A López‐Bernal, Álvaro %A Loranty, M. M. %A Lüttschwager, Dietmar %A Macinnis‐Ng, Cate %A Maréchaux, Isabelle %A Martin, Timothy A. %A Matheny, Ashley M. %A McDowell, Nate G. %A McMahon, Sean M. %A Meir, Patrick %A Mészáros, Ilona %A Migliavacca, Mirco %A Mitchell, Patrick J. %A Mölder, Meelis %A Montagnani, Leonardo %A Moore, Georgianne W. %A Nakada, Ryogo %A Niu, Furong %A Nolan, Rachael H. %A Norby, Richard J. %A Novick, Kimberly A. %A Oberhuber, Walter %A Obojes, Nikolaus %A Oishi, A. Christopher %A Oliveira, Rafael S. %A Oren, Ram %A Ourcival, Jean‐Marc %A Paljakka, Teemu %A Pérez‐Priego, Óscar %A Peri, Pablo Luís %A Peters, Richard L. %A Pfautsch, Sebastian %A Pockman, William T. %A Preisler, Yakir %A Rascher, Katherine G. %A Robinson, George R. %A Rocha, Humberto Ribeiro da %A Rocheteau, Alain %A Röll, Alexander %A Rosado, Bruno H. P. %A Rowland, Lucy %A Rubtsov, Alexey V. %A Sabaté, Santiago %A Salmon, Yann %A Salomón, Roberto L. %A Sánchez‐Costa, Elisenda %A Schäfer, Karina V. R. %A Schuldt, Bernhard %A Shashkin, Alexandr %A Stahl, Clément %A Stojanović, Marko %A Suárez, Juan Carlos %A Sun, Ge %A Szatniewska, Justyna %A Tatarinov, Fyodor %A Tesař, Miroslav %A Thomas, Frank M. %A Tor‐ngern, Pantana %A Urban, Josef %A Valladares, Fernando %A Tol, Christiaan van der %A Meerveld, Ilja van %A Varlagin, Andrej %A Voigt, Holm %A Warren, J. M. %A Werner, Christiane %A Werner, Willy %A Wieser, Gerhard %A Wingate, Lisa %A Wullschleger, Stan %A Yi, K. %A Zweifel, Roman %A Steppe, Kathy %A Mencuccini, Maurizio %A Martínez‐Vilalta, Jordi %J Earth System Science Data, Volume 13, Issue 6 %D 2021 %V 13 %N 6 %I Copernicus GmbH %F Poyatos-2021-Global %X Abstract. Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land–atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80 % of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 % of the datasets. Many datasets contain data for species that make up 90 % or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The “sapfluxnetr” R package – designed to access, visualize, and process SAPFLUXNET data – is available from CRAN. %R 10.5194/essd-13-2607-2021 %U https://gwf-uwaterloo.github.io/gwf-publications/G21-160001 %U https://doi.org/10.5194/essd-13-2607-2021 %P 2607-2649
Markdown (Informal)
[Global transpiration data from sap flow measurements: the SAPFLUXNET database](https://gwf-uwaterloo.github.io/gwf-publications/G21-160001) (Poyatos et al., GWF 2021)
- Global transpiration data from sap flow measurements: the SAPFLUXNET database (Poyatos et al., GWF 2021)
ACL
- Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos Pereira Marinho Aidar, Scott T. Allen, M. S. Alvarado-Barrientos, Kristina J. Anderson‐Teixeira, L. M. T. Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, et al.. 2021. Global transpiration data from sap flow measurements: the SAPFLUXNET database. Earth System Science Data, Volume 13, Issue 6, 13(6):2607–2649.