Jean‐Marc Ourcival


2021

DOI bib
Author Correction: The FLUXNET2015 dataset and the ONEFlux processing pipeline for eddy covariance data
Gilberto Pastorello, Carlo Trotta, Eleonora Canfora, Housen Chu, Danielle Christianson, You-Wei Cheah, C. Poindexter, Jiquan Chen, Abdelrahman Elbashandy, Marty Humphrey, Peter Isaac, Diego Polidori, Markus Reichstein, Alessio Ribeca, Catharine van Ingen, Nicolas Vuichard, Leiming Zhang, B.D. Amiro, Christof Ammann, M. Altaf Arain, Jonas Ardö, Timothy J. Arkebauer, Stefan K. Arndt, Nicola Arriga, Marc Aubinet, Mika Aurela, Dennis Baldocchi, Alan Barr, Eric Beamesderfer, Luca Belelli Marchesini, Onil Bergeron, Jason Beringer, Christian Bernhofer, Daniel Berveiller, D. P. Billesbach, T. Andrew Black, Peter D. Blanken, Gil Bohrer, Julia Boike, Paul V. Bolstad, Damien Bonal, Jean-Marc Bonnefond, David R. Bowling, Rosvel Bracho, Jason Brodeur, Christian Brümmer, Nina Buchmann, Benoît Burban, Sean P. Burns, Pauline Buysse, Peter Cale, M. Cavagna, Pierre Cellier, Shiping Chen, Isaac Chini, Torben R. Christensen, James Cleverly, Alessio Collalti, Claudia Consalvo, Bruce D. Cook, David Cook, Carole Coursolle, Edoardo Cremonese, Peter S. Curtis, Ettore D’Andrea, Humberto da Rocha, Xiaoqin Dai, Kenneth J. Davis, Bruno De Cinti, A. de Grandcourt, Anne De Ligne, Raimundo Cosme de Oliveira, Nicolas Delpierre, Ankur R. Desai, Carlos Marcelo Di Bella, Paul Di Tommasi, Han Dolman, Francisco Domingo, Gang Dong, Sabina Dore, Pierpaolo Duce, Éric Dufrêne, Allison L. Dunn, J.T. Dusek, Derek Eamus, Uwe Eichelmann, Hatim Abdalla M. ElKhidir, Werner Eugster, Cäcilia Ewenz, B. E. Ewers, D. Famulari, Silvano Fares, Iris Feigenwinter, Andrew Feitz, Rasmus Fensholt, Gianluca Filippa, M. L. Fischer, J. M. Frank, Marta Galvagno, Mana Gharun, Damiano Gianelle, Bert Gielen, Beniamino Gioli, Anatoly A. Gitelson, Ignacio Goded, Mathias Goeckede, Allen H. Goldstein, Christopher M. Gough, Michael L. Goulden, Alexander Graf, Anne Griebel, Carsten Gruening, Thomas Grünwald, Albin Hammerle, Shijie Han, Xingguo Han, Birger Ulf Hansen, Chad Hanson, Juha Hatakka, Yongtao He, Markus Hehn, Bernard Heinesch, Nina Hinko‐Najera, Lukas Hörtnagl, Lindsay B. Hutley, Andreas Ibrom, Hiroki Ikawa, Marcin Jackowicz-Korczyński, Dalibor Janouš, W.W.P. Jans, Rachhpal S. Jassal, Shicheng Jiang, Tomomichi Kato, Myroslava Khomik, Janina Klatt, Alexander Knohl, Sara Knox, Hideki Kobayashi, Georgia R. Koerber, Olaf Kolle, Yukio Kosugi, Ayumi Kotani, Andrew S. Kowalski, Bart Kruijt, Juliya Kurbatova, Werner L. Kutsch, Hyojung Kwon, Samuli Launiainen, Tuomas Laurila, B. E. Law, R. Leuning, Yingnian Li, Michael J. Liddell, Jean‐Marc Limousin, Marryanna Lion, Adam Liska, Annalea Lohila, Ana López‐Ballesteros, Efrèn López‐Blanco, Benjamin Loubet, Denis Loustau, Antje Lucas-Moffat, Johannes Lüers, Siyan Ma, Craig Macfarlane, Vincenzo Magliulo, Regine Maier, Ivan Mammarella, Giovanni Manca, Barbara Marcolla, Hank A. Margolis, Serena Marras, W. J. Massman, Mikhail Mastepanov, Roser Matamala, Jaclyn Hatala Matthes, Francesco Mazzenga, Harry McCaughey, Ian McHugh, Andrew M. S. McMillan, Lutz Merbold, Wayne S. Meyer, Tilden P. Meyers, S. D. Miller, Stefano Minerbi, Uta Moderow, Russell K. Monson, Leonardo Montagnani, Caitlin E. Moore, Eddy Moors, Virginie Moreaux, Christine Moureaux, J. William Munger, T. Nakai, Johan Neirynck, Zoran Nesic, Giacomo Nicolini, Asko Noormets, Matthew Northwood, Marcelo D. Nosetto, Yann Nouvellon, Kimberly A. Novick, W. C. Oechel, Jørgen E. Olesen, Jean‐Marc Ourcival, S. A. Papuga, Frans‐Jan W. Parmentier, Eugénie Paul‐Limoges, Marián Pavelka, Matthias Peichl, Elise Pendall, Richard P. Phillips, Kim Pilegaard, Norbert Pirk, Gabriela Posse, Thomas L. Powell, Heiko Prasse, Suzanne M. Prober, Serge Rambal, Üllar Rannik, Naama Raz‐Yaseef, Corinna Rebmann, David E. Reed, Víctor Resco de Dios, Natalia Restrepo‐Coupe, Borja R. Reverter, Marilyn Roland, Simone Sabbatini, Torsten Sachs, S. R. Saleska, Enrique P. Sánchez-Cañete, Zulia Mayari Sánchez-Mejía, Hans Peter Schmid, Marius Schmidt, Karl Schneider, Frederik Schrader, Ivan Schroder, Russell L. Scott, Pavel Sedlák, Penélope Serrano-Ortíz, Changliang Shao, Peili Shi, Ivan Shironya, Lukas Siebicke, Ladislav Šigut, Richard Silberstein, Costantino Sirca, Donatella Spano, R. Steinbrecher, Robert M. Stevens, Cove Sturtevant, Andy Suyker, Torbern Tagesson, Satoru Takanashi, Yanhong Tang, Nigel Tapper, Jonathan E. Thom, Michele Tomassucci, Juha‐Pekka Tuovinen, S. P. Urbanski, Р. Валентини, M. K. van der Molen, Eva van Gorsel, J. van Huissteden, Andrej Varlagin, Joe Verfaillie, Timo Vesala, Caroline Vincke, Domenico Vitale, N. N. Vygodskaya, Jeffrey P. Walker, Elizabeth A. Walter‐Shea, Huimin Wang, R. J. Weber, Sebastian Westermann, Christian Wille, Steven C. Wofsy, Georg Wohlfahrt, Sebastian Wolf, William Woodgate, Yuelin Li, Roberto Zampedri, Junhui Zhang, Guoyi Zhou, Donatella Zona, D. Agarwal, Sébastien Biraud, M. S. Torn, Dario Papale
Scientific Data, Volume 8, Issue 1

A Correction to this paper has been published: https://doi.org/10.1038/s41597-021-00851-9.

DOI bib
Global transpiration data from sap flow measurements: the SAPFLUXNET database
Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos Pereira Marinho Aidar, Scott T. Allen, M. Susana Alvarado-Barrientos, Kristina J. Anderson‐Teixeira, L. M. T. Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert C. Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, B. Blakely, Johnny L. Boggs, Gil Bohrer, Paul V. Bolstad, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jérôme Chave, Hui Chen, César Cisneros Vaca, Kenneth L. Clark, Edoardo Cremonese, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, Frédéric Chauvaud, Michal Dohnal, Jean‐Christophe Domec, Sebinasi Dzikiti, C. Edgar, Rebekka Eichstaedt, Tarek S. El‐Madany, J.A. Elbers, Cleiton B. Eller, Eugénie Euskirchen, B. E. Ewers, Patrick Fonti, Alicia Forner, David I. Forrester, Helber C. Freitas, Marta Galvagno, Omar García-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, J. P. Grace, André Granier, Anne Griebel, Guangyu Yang, Mark B Gush, P. J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernández‐Santana, Valentine Herrmann, Teemu Hölttä, F. Holwerda, Hongzhong Dang, J. E. Irvine, Supat Isarangkool Na Ayutthaya, P. G. Jarvis, Hubert Jochheim, Carlos A. Joly, Julia Kaplick, Hyun‐Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick Lane, Petra Lang, Andrei Lapenas, Víctor Lechuga, Minsu Lee, Christoph Leuschner, Jean‐Marc Limousin, Juan Carlos Linares, Maj-Lena Linderson, A. Lindroth, Pilar Llorens, Álvaro López-Bernal, M. M. Loranty, Dietmar Lüttschwager, Cate Macinnis‐Ng, Isabelle Maréchaux, Timothy A. Martin, Ashley M. Matheny, Nate G. McDowell, Sean M. McMahon, Patrick Meir, Ilona Mészáros, Mirco Migliavacca, Patrick J. Mitchell, Meelis Mölder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, R. J. Norby, Kimberly A. Novick, Walter Oberhuber, Nikolaus Obojes, Christopher A. Oishi, Rafael S. Oliveira, Ram Oren, Jean‐Marc Ourcival, Teemu Paljakka, Óscar Pérez-Priego, Pablo Luís Peri, Richard L. Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine G. Rascher, George R. Robinson, Humberto Ribeiro da Rocha, Alain Rocheteau, Alexander Röll, Bruno H. P. Rosado, Lucy Rowland, Alexey V. Rubtsov, Santiago Sabaté, Yann Salmon, Roberto L. Salomón, Elisenda Sánchez-Costa, Karina V. R. Schäfer, Bernhard Schuldt, A. V. Shashkin, Clément Stahl, Marko Stojanović, Juan Carlos Suárez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesař, Frank M. Thomas, Pantana Tor‐ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, Jeffrey M. Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan D. Wullschleger, K. Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, Jordi Martínez‐Vilalta
Earth System Science Data, Volume 13, Issue 6

Abstract. Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land–atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80 % of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 % of the datasets. Many datasets contain data for species that make up 90 % or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The “sapfluxnetr” R package – designed to access, visualize, and process SAPFLUXNET data – is available from CRAN.

2020

DOI bib
The FLUXNET2015 dataset and the ONEFlux processing pipeline for eddy covariance data
Gilberto Pastorello, Carlo Trotta, Eleonora Canfora, Housen Chu, Danielle Christianson, You-Wei Cheah, C. Poindexter, Jiquan Chen, Abdelrahman Elbashandy, Marty Humphrey, Peter Isaac, Diego Polidori, Markus Reichstein, Alessio Ribeca, Catharine van Ingen, Nicolas Vuichard, Leiming Zhang, B.D. Amiro, Christof Ammann, M. Altaf Arain, Jonas Ardö, Timothy J. Arkebauer, Stefan K. Arndt, Nicola Arriga, Marc Aubinet, Mika Aurela, Dennis Baldocchi, Alan Barr, Eric Beamesderfer, Luca Belelli Marchesini, Onil Bergeron, Jason Beringer, Christian Bernhofer, Daniel Berveiller, D. P. Billesbach, T. Andrew Black, Peter D. Blanken, Gil Bohrer, Julia Boike, Paul V. Bolstad, Damien Bonal, Jean-Marc Bonnefond, David R. Bowling, Rosvel Bracho, Jason Brodeur, Christian Brümmer, Nina Buchmann, Benoît Burban, Sean P. Burns, Pauline Buysse, Peter Cale, M. Cavagna, Pierre Cellier, Shiping Chen, Isaac Chini, Torben R. Christensen, James Cleverly, Alessio Collalti, Claudia Consalvo, Bruce D. Cook, David Cook, Carole Coursolle, Edoardo Cremonese, Peter S. Curtis, Ettore D’Andrea, Humberto da Rocha, Xiaoqin Dai, Kenneth J. Davis, Bruno De Cinti, A. de Grandcourt, Anne De Ligne, Raimundo Cosme de Oliveira, Nicolas Delpierre, Ankur R. Desai, Carlos Marcelo Di Bella, Paul Di Tommasi, Han Dolman, Francisco Domingo, Gang Dong, Sabina Dore, Pierpaolo Duce, Éric Dufrêne, Allison L. Dunn, J.T. Dusek, Derek Eamus, Uwe Eichelmann, Hatim Abdalla M. ElKhidir, Werner Eugster, Cäcilia Ewenz, B. E. Ewers, D. Famulari, Silvano Fares, Iris Feigenwinter, Andrew Feitz, Rasmus Fensholt, Gianluca Filippa, M. L. Fischer, J. M. Frank, Marta Galvagno, Mana Gharun, Damiano Gianelle, Bert Gielen, Beniamino Gioli, Anatoly A. Gitelson, Ignacio Goded, Mathias Goeckede, Allen H. Goldstein, Christopher M. Gough, Michael L. Goulden, Alexander Graf, Anne Griebel, Carsten Gruening, Thomas Grünwald, Albin Hammerle, Shijie Han, Xingguo Han, Birger Ulf Hansen, Chad Hanson, Juha Hatakka, Yongtao He, Markus Hehn, Bernard Heinesch, Nina Hinko‐Najera, Lukas Hörtnagl, Lindsay B. Hutley, Andreas Ibrom, Hiroki Ikawa, Marcin Jackowicz-Korczyński, Dalibor Janouš, W.W.P. Jans, Rachhpal S. Jassal, Shicheng Jiang, Tomomichi Kato, Myroslava Khomik, Janina Klatt, Alexander Knohl, Sara Knox, Hideki Kobayashi, Georgia R. Koerber, Olaf Kolle, Yukio Kosugi, Ayumi Kotani, Andrew S. Kowalski, Bart Kruijt, Juliya Kurbatova, Werner L. Kutsch, Hyojung Kwon, Samuli Launiainen, Tuomas Laurila, B. E. Law, R. Leuning, Yingnian Li, Michael J. Liddell, Jean‐Marc Limousin, Marryanna Lion, Adam Liska, Annalea Lohila, Ana López‐Ballesteros, Efrèn López‐Blanco, Benjamin Loubet, Denis Loustau, Antje Maria Moffat, Johannes Lüers, Siyan Ma, Craig Macfarlane, Vincenzo Magliulo, Regine Maier, Ivan Mammarella, Giovanni Manca, Barbara Marcolla, Hank A. Margolis, Serena Marras, W. J. Massman, Mikhail Mastepanov, Roser Matamala, Jaclyn Hatala Matthes, Francesco Mazzenga, Harry McCaughey, Ian McHugh, Andrew M. S. McMillan, Lutz Merbold, Wayne S. Meyer, Tilden P. Meyers, S. D. Miller, Stefano Minerbi, Uta Moderow, Russell K. Monson, Leonardo Montagnani, Caitlin E. Moore, Eddy Moors, Virginie Moreaux, Christine Moureaux, J. William Munger, T. Nakai, Johan Neirynck, Zoran Nesic, Giacomo Nicolini, Asko Noormets, Matthew Northwood, Marcelo D. Nosetto, Yann Nouvellon, Kimberly A. Novick, W. C. Oechel, Jørgen E. Olesen, Jean‐Marc Ourcival, S. A. Papuga, Frans‐Jan W. Parmentier, Eugénie Paul‐Limoges, Marián Pavelka, Matthias Peichl, Elise Pendall, Richard P. Phillips, Kim Pilegaard, Norbert Pirk, Gabriela Posse, Thomas L. Powell, Heiko Prasse, Suzanne M. Prober, Serge Rambal, Üllar Rannik, Naama Raz‐Yaseef, Corinna Rebmann, David E. Reed, Víctor Resco de Dios, Natalia Restrepo‐Coupe, Borja R. Reverter, Marilyn Roland, Simone Sabbatini, Torsten Sachs, S. R. Saleska, Enrique P. Sánchez-Cañete, Zulia Mayari Sánchez-Mejía, Hans Peter Schmid, Marius Schmidt, Karl Schneider, Frederik Schrader, Ivan Schroder, Russell L. Scott, Pavel Sedlák, Penélope Serrano-Ortíz, Changliang Shao, Peili Shi, Ivan Shironya, Lukas Siebicke, Ladislav Šigut, Richard Silberstein, Costantino Sirca, Donatella Spano, R. Steinbrecher, Robert M. Stevens, Cove Sturtevant, Andy Suyker, Torbern Tagesson, Satoru Takanashi, Yanhong Tang, Nigel Tapper, Jonathan E. Thom, Michele Tomassucci, Juha‐Pekka Tuovinen, S. P. Urbanski, Р. Валентини, M. K. van der Molen, Eva van Gorsel, J. van Huissteden, Andrej Varlagin, Joe Verfaillie, Timo Vesala, Caroline Vincke, Domenico Vitale, N. N. Vygodskaya, Jeffrey P. Walker, Elizabeth A. Walter‐Shea, Huimin Wang, R. J. Weber, Sebastian Westermann, Christian Wille, Steven C. Wofsy, Georg Wohlfahrt, Sebastian Wolf, William Woodgate, Yuelin Li, Roberto Zampedri, Junhui Zhang, Guoyi Zhou, Donatella Zona, D. Agarwal, Sébastien Biraud, M. S. Torn, Dario Papale
Scientific Data, Volume 7, Issue 1

Abstract The FLUXNET2015 dataset provides ecosystem-scale data on CO 2 , water, and energy exchange between the biosphere and the atmosphere, and other meteorological and biological measurements, from 212 sites around the globe (over 1500 site-years, up to and including year 2014). These sites, independently managed and operated, voluntarily contributed their data to create global datasets. Data were quality controlled and processed using uniform methods, to improve consistency and intercomparability across sites. The dataset is already being used in a number of applications, including ecophysiology studies, remote sensing studies, and development of ecosystem and Earth system models. FLUXNET2015 includes derived-data products, such as gap-filled time series, ecosystem respiration and photosynthetic uptake estimates, estimation of uncertainties, and metadata about the measurements, presented for the first time in this paper. In addition, 206 of these sites are for the first time distributed under a Creative Commons (CC-BY 4.0) license. This paper details this enhanced dataset and the processing methods, now made available as open-source codes, making the dataset more accessible, transparent, and reproducible.
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