Abstract Despite the importance of high-latitude surface energy budgets (SEBs) for land-climate interactions in the rapidly changing Arctic, uncertainties in their prediction persist. Here, we harmonize SEB observations across a network of vegetated and glaciated sites at circumpolar scale (1994–2021). Our variance-partitioning analysis identifies vegetation type as an important predictor for SEB-components during Arctic summer (June-August), compared to other SEB-drivers including climate, latitude and permafrost characteristics. Differences among vegetation types can be of similar magnitude as between vegetation and glacier surfaces and are especially high for summer sensible and latent heat fluxes. The timing of SEB-flux summer-regimes (when daily mean values exceed 0 Wm −2 ) relative to snow-free and -onset dates varies substantially depending on vegetation type, implying vegetation controls on snow-cover and SEB-flux seasonality. Our results indicate complex shifts in surface energy fluxes with land-cover transitions and a lengthening summer season, and highlight the potential for improving future Earth system models via a refined representation of Arctic vegetation types.

A Correction to this paper has been published: https://doi.org/10.1038/s41597-021-00851-9.

• Phenological controls over aerodynamic resistance ( R ah ) were investigated. • R ah exhibits significant seasonal variability across a wide range of sites. • These shifts in R ah were caused by phenology in some ecosystems. • Accounting for variation in kB −1 is important for improving predictions of H . Surface roughness – a key control on land-atmosphere exchanges of heat and momentum – differs between dormant and growing seasons. However, how surface roughness shifts seasonally at fine time scales (e.g., days) in response to changing canopy conditions is not well understood. This study: (1) explores how aerodynamic resistance changes seasonally; (2) investigates what drives these seasonal shifts, including the role of vegetation phenology; and (3) quantifies the importance of including seasonal changes of aerodynamic resistance in “big leaf” models of sensible heat flux ( H ). We evaluated aerodynamic resistance and surface roughness lengths for momentum ( z 0m ) and heat ( z 0h ) using the kB −1 parameter (ln( z 0m / z 0h )). We used AmeriFlux data to obtain surface-roughness estimates, and PhenoCam greenness data for phenology. This analysis included 23 sites and ∼190 site years from deciduous broadleaf, evergreen needleleaf, woody savanna, cropland, grassland, and shrubland plant-functional types (PFTs). Results indicated clear seasonal patterns in aerodynamic resistance to sensible heat transfer ( R ah ). This seasonality tracked PhenoCam-derived start-of-season green-up transitions in PFTs displaying the most significant seasonal changes in canopy structure, with R ah decreasing near green-up transitions. Conversely, in woody savanna sites and evergreen needleleaf forests, patterns in R ah were not linked to green-up. Our findings highlight that decreases in kB −1 are an important control over R ah , explaining > 50% of seasonal variation in R ah across most sites. Decreases in kB −1 during green-up are likely caused by increasing z 0h in response to higher leaf area index. Accounting for seasonal variation in kB −1 is key for predicting H as well; assuming kB −1 to be constant resulted in significant biases that also exhibited strong seasonal patterns. Overall, we found that aerodynamic resistance can be sensitive to phenology in ecosystems having strong seasonality in leaf area, and this linkage is critical for understanding land-atmosphere interactions at seasonal time scales.

• Large-scale eddy-covariance flux datasets need to be used with footprint-awareness • Using a fixed-extent target area across sites can bias model-data integration • Most sites do not represent the dominant land-cover type at a larger spatial extent • A representativeness index provides general guidance for site selection and data use Large datasets of greenhouse gas and energy surface-atmosphere fluxes measured with the eddy-covariance technique (e.g., FLUXNET2015, AmeriFlux BASE) are widely used to benchmark models and remote-sensing products. This study addresses one of the major challenges facing model-data integration: To what spatial extent do flux measurements taken at individual eddy-covariance sites reflect model- or satellite-based grid cells? We evaluate flux footprints—the temporally dynamic source areas that contribute to measured fluxes—and the representativeness of these footprints for target areas (e.g., within 250–3000 m radii around flux towers) that are often used in flux-data synthesis and modeling studies. We examine the land-cover composition and vegetation characteristics, represented here by the Enhanced Vegetation Index (EVI), in the flux footprints and target areas across 214 AmeriFlux sites, and evaluate potential biases as a consequence of the footprint-to-target-area mismatch. Monthly 80% footprint climatologies vary across sites and through time ranging four orders of magnitude from 10 3 to 10 7 m 2 due to the measurement heights, underlying vegetation- and ground-surface characteristics, wind directions, and turbulent state of the atmosphere. Few eddy-covariance sites are located in a truly homogeneous landscape. Thus, the common model-data integration approaches that use a fixed-extent target area across sites introduce biases on the order of 4%–20% for EVI and 6%–20% for the dominant land cover percentage. These biases are site-specific functions of measurement heights, target area extents, and land-surface characteristics. We advocate that flux datasets need to be used with footprint awareness, especially in research and applications that benchmark against models and data products with explicit spatial information. We propose a simple representativeness index based on our evaluations that can be used as a guide to identify site-periods suitable for specific applications and to provide general guidance for data use.

Evergreen conifer forests are the most prevalent land cover type in North America. Seasonal changes in the color of evergreen forest canopies have been documented with near-surface remote sensing, but the physiological mechanisms underlying these changes, and the implications for photosynthetic uptake, have not been fully elucidated. Here, we integrate on-the-ground phenological observations, leaf-level physiological measurements, near surface hyperspectral remote sensing and digital camera imagery, tower-based CO2 flux measurements, and a predictive model to simulate seasonal canopy color dynamics. We show that seasonal changes in canopy color occur independently of new leaf production, but track changes in chlorophyll fluorescence, the photochemical reflectance index, and leaf pigmentation. We demonstrate that at winter-dormant sites, seasonal changes in canopy color can be used to predict the onset of canopy-level photosynthesis in spring, and its cessation in autumn. Finally, we parameterize a simple temperature-based model to predict the seasonal cycle of canopy greenness, and we show that the model successfully simulates interannual variation in the timing of changes in canopy color. These results provide mechanistic insight into the factors driving seasonal changes in evergreen canopy color and provide opportunities to monitor and model seasonal variation in photosynthetic activity using color-based vegetation indices.

The response of evapotranspiration (ET) to warming is of critical importance to the water and carbon cycle of the boreal biome, a mosaic of land cover types dominated by forests and peatlands. The effect of warming-induced vapour pressure deficit (VPD) increases on boreal ET remains poorly understood because peatlands are not specifically represented as plant functional types in Earth system models. Here we show that peatland ET increases more than forest ET with increasing VPD using observations from 95 eddy covariance tower sites. At high VPD of more than 2 kPa, peatland ET exceeds forest ET by up to 30%. Future (2091–2100) mid-growing season peatland ET is estimated to exceed forest ET by over 20% in about one-third of the boreal biome for RCP4.5 and about two-thirds for RCP8.5. Peatland-specific ET responses to VPD should therefore be included in Earth system models to avoid biases in water and carbon cycle projections.

Abstract The FLUXNET2015 dataset provides ecosystem-scale data on CO 2 , water, and energy exchange between the biosphere and the atmosphere, and other meteorological and biological measurements, from 212 sites around the globe (over 1500 site-years, up to and including year 2014). These sites, independently managed and operated, voluntarily contributed their data to create global datasets. Data were quality controlled and processed using uniform methods, to improve consistency and intercomparability across sites. The dataset is already being used in a number of applications, including ecophysiology studies, remote sensing studies, and development of ecosystem and Earth system models. FLUXNET2015 includes derived-data products, such as gap-filled time series, ecosystem respiration and photosynthetic uptake estimates, estimation of uncertainties, and metadata about the measurements, presented for the first time in this paper. In addition, 206 of these sites are for the first time distributed under a Creative Commons (CC-BY 4.0) license. This paper details this enhanced dataset and the processing methods, now made available as open-source codes, making the dataset more accessible, transparent, and reproducible.

Author(s): Chu, H; Baldocchi, DD; Poindexter, C; Abraha, M; Desai, AR; Bohrer, G; Arain, MA; Griffis, T; Blanken, PD; O'Halloran, TL; Thomas, RQ; Zhang, Q; Burns, SP; Frank, JM; Christian, D; Brown, S; Black, TA; Gough, CM; Law, BE; Lee, X; Chen, J; Reed, DE; Massman, WJ; Clark, K; Hatfield, J; Prueger, J; Bracho, R; Baker, JM; Martin, TA | Abstract: Aerodynamic canopy height (ha) is the effective height of vegetation canopy for its influence on atmospheric fluxes and is a key parameter of surface-atmosphere coupling. However, methods to estimate ha from data are limited. This synthesis evaluates the applicability and robustness of the calculation of ha from eddy covariance momentum-flux data. At 69 forest sites, annual ha robustly predicted site-to-site and year-to-year differences in canopy heights (R2n=n0.88, 111nsite-years). At 23 cropland/grassland sites, weekly ha successfully captured the dynamics of vegetation canopies over growing seasons (R2ngn0.70 in 74nsite-years). Our results demonstrate the potential of flux-derived ha determination for tracking the seasonal, interannual, and/or decadal dynamics of vegetation canopies including growth, harvest, land use change, and disturbance. The large-scale and time-varying ha derived from flux networks worldwide provides a new benchmark for regional and global Earth system models and satellite remote sensing of canopy structure.